------------------------------------------------------------------------ r97 | cgerbig | 2017-06-30 16:44:51 +0200 (Fri, 30 Jun 2017) | 5 lines Changed paths: M /trunk/RSources/ReadSynmapDMM.r M /trunk/RSources/getModis.r A /trunk/RSources/getSynmap.r D /trunk/RSources/gridEurope.r M /trunk/RSources/writeOutput.r M /trunk/VPRMpreproc.r M /trunk/config.r M /trunk/config_EU2_2002.r M /trunk/config_EU2_2003.r M /trunk/config_EU2_2004.r M /trunk/config_EU2_2005.r M /trunk/config_EU2_2006.r M /trunk/config_EU2_2007.r M /trunk/config_EU2_2008.r M /trunk/config_EU2_2009.r M /trunk/config_EU2_2010.r M /trunk/config_EU2_2011.r M /trunk/config_EU2_2012.r M /trunk/config_EU2_2013.r M /trunk/config_EU2_2015.r M /trunk/config_EU2_2015_V006.r M /trunk/config_EU2_2016_V006.r M /trunk/config_Sib_2012.r M /trunk/config_Sib_2013.r M /trunk/config_Sib_2014.r M /trunk/config_Sib_small_2012.r M /trunk/config_Sib_small_2013.r M /trunk/manual.odt M /trunk/submit_preproc.sh - removed username and password from getModis.r, use environment variables for these - renamed gridEurope.r to getSynmap.r, set path for synmap in config.r - fixed bug in ReadSynmap (rounding issues) - bugfix to limit evi and lswi to within [0,1] and [-1,1] ------------------------------------------------------------------------ r96 | cgerbig | 2017-06-26 17:23:16 +0200 (Mon, 26 Jun 2017) | 2 lines Changed paths: A /trunk/config_EU2_2015_V006.r A /trunk/config_EU2_2016_V006.r M /trunk/config_Sib_small_2012.r M /trunk/config_Sib_small_2013.r - added config files to use V006 MODIS data ------------------------------------------------------------------------ r93 | cgerbig | 2017-02-23 09:17:20 +0100 (Thu, 23 Feb 2017) | 2 lines Changed paths: M /trunk/submit_loess.sh - fixed 2GB file size problem for Jena cluster (job submission to io rather than to all for large tiles) ------------------------------------------------------------------------ r91 | cgerbig | 2017-02-21 08:23:07 +0100 (Tue, 21 Feb 2017) | 4 lines Changed paths: M /trunk/RSources/getModis.r M /trunk/RSources/writeOutput.r M /trunk/submit_loess.sh M /trunk/submit_preproc.sh - bugfixed getModis.r for cases when a full day of data is missing - added rusage to shell scripts *.sh to reserve memory (avoids swapping) - bugfixed final nc output (modis version was incorrect) ------------------------------------------------------------------------ r87 | cgerbig | 2017-02-01 11:33:45 +0100 (Wed, 01 Feb 2017) | 6 lines Changed paths: M /trunk/RSources/doResampling.r M /trunk/RSources/extractAndReduce.r M /trunk/RSources/getModis.r M /trunk/VPRMpreproc.r M /trunk/clean_all.r M /trunk/config.r M /trunk/config_EU2_2015.r M /trunk/submit_loess.sh - added flag "prepr.additionalTF" in config.r to indicate if part of the year has been processed before - added mrtdatadir in config.r (crashed with "Sys.setenv(MRTDATADIR=mpath)" in doResampling.r) - modified getMODIS.r to cope with change in MODIS ftp (now https), also adopted path to include modis version - fixed file check in extractAndReduce.r - modified submit_loes.sh to start 20 jobs parallel ------------------------------------------------------------------------ r85 | cgerbig | 2016-12-19 13:32:35 +0100 (Mon, 19 Dec 2016) | 6 lines Changed paths: M /trunk/RSources/doResampling.r M /trunk/RSources/getModis.r M /trunk/VPRMpreproc.r A /trunk/config_LA_Basin_2010.r A /trunk/config_Sib_2014.r A /trunk/config_Sib_2015.r A /trunk/process_loess_wait.r M /trunk/submit_loess.sh M /trunk/submit_preproc.sh - added config_LA_Basin_2010.r, config_Sib_2014.r (Siberia 1/4x1/4 resolution), and config_Sib_2015.r (Siberia 1/12x1/8 resolution) - adapted to changes in lsf queuing system (memory units kB, group option -g abandonned): submit_preproc.sh, submit_loess.sh, added process_loess_wait.r - MODIS data download needs password now, modified getMODIS.r - changed projection from "NoDatum" to "WGS84", improved geolocation of MODIS in the LA Basin domain ------------------------------------------------------------------------ r80 | cgerbig | 2015-08-25 15:55:40 +0200 (Tue, 25 Aug 2015) | 3 lines Changed paths: M /trunk/VPRMpreproc.r M /trunk/submit_loess.sh - updated documentation of SANMAP classes (table was wrong; from Jung et al. paper instead from legend for SYNMAP dataset) - added sleep command in submit_loess.sh to prevent multiple jobs being submitted to the same node using up memory ------------------------------------------------------------------------ r78 | cgerbig | 2015-06-23 10:54:54 +0200 (Tue, 23 Jun 2015) | 5 lines Changed paths: M /trunk/RSources/parseNamelist.r M /trunk/VPRMpreproc.r M /trunk/config.r M /trunk/config_EU2_2002.r M /trunk/config_EU2_2003.r M /trunk/config_EU2_2004.r M /trunk/config_EU2_2005.r M /trunk/config_EU2_2006.r M /trunk/config_EU2_2007.r M /trunk/config_EU2_2008.r M /trunk/config_EU2_2009.r M /trunk/config_EU2_2010.r M /trunk/config_EU2_2011.r M /trunk/config_EU2_2012.r M /trunk/config_EU2_2013.r A /trunk/config_EU2_2015.r M /trunk/config_OXK_2006.r M /trunk/config_OXK_2007.r M /trunk/config_OXK_2008.r M /trunk/config_SA2001.r M /trunk/config_SA2001_add.r M /trunk/config_SA2004_add.r M /trunk/config_SA2005_add.r M /trunk/config_Sib_2012.r M /trunk/config_Sib_2013.r M /trunk/config_Sib_small_2012.r M /trunk/config_Sib_small_2013.r M /trunk/process_loess.r M /trunk/submit_loess.sh M /trunk/submit_preproc.sh - added a feature that allows for preprocessing the current year; for this added "ldoy" as the last day of the year to process (i.e. the last day with MODIS data available) - modified memory requirement for Jena in submit_loess.sh and submit_preproc.sh ------------------------------------------------------------------------ r77 | cgerbig | 2014-05-27 15:34:32 +0200 (Tue, 27 May 2014) | 3 lines Changed paths: M /trunk/RSources/getModis.r M /trunk/config.r A /trunk/config_EU2_2013.r A /trunk/config_Sib_2012.r A /trunk/config_Sib_2013.r A /trunk/config_Sib_small_2012.r A /trunk/config_Sib_small_2013.r M /trunk/submit_loess.sh - increased memory allocation in submit_loess.sh - added config files for Siberia (Zotto domain used for Jan Winderlich PhD Thesis) ------------------------------------------------------------------------ r75 | cgerbig | 2014-01-08 16:33:30 +0100 (Wed, 08 Jan 2014) | 4 lines Changed paths: M /trunk/RSources/getModis.r A /trunk/RSources/land_sea_mask.r M /trunk/RSources/writeOutput.r - added try() wrapper in getMODIS.r to allow 10 tries for each connection attempt (ftp site at usgs often not responsive) - added script land_sea_mask.r to create land-sea mask based on synmap - corrected references in writeOutput.r ------------------------------------------------------------------------ r74 | cgerbig | 2013-10-25 14:35:31 +0200 (Fri, 25 Oct 2013) | 3 lines Changed paths: M /trunk/RSources/getModis.r M /trunk/config.r A /trunk/config_EU2_2002.r A /trunk/config_EU2_2003.r A /trunk/config_EU2_2004.r A /trunk/config_EU2_2005.r M /trunk/config_EU2_2006.r M /trunk/config_EU2_2007.r M /trunk/config_EU2_2008.r M /trunk/config_EU2_2009.r A /trunk/config_EU2_2010.r M /trunk/config_EU2_2011.r M /trunk/config_EU2_2012.r -modified getMODIS to take version of MODIS product into account (bugfix) -updated naming of domains for STILT in config files ------------------------------------------------------------------------ r71 | cgerbig | 2013-09-17 16:21:52 +0200 (Tue, 17 Sep 2013) | 2 lines Changed paths: M /trunk/RSources/combineTiles.r -bugfix: still had "browser()" in combineTiles.r ------------------------------------------------------------------------ r70 | cgerbig | 2013-09-17 16:20:06 +0200 (Tue, 17 Sep 2013) | 5 lines Changed paths: M /trunk/RSources/combineTiles.r M /trunk/RSources/getModis.r M /trunk/RSources/hdfread.r M /trunk/RSources/project.nice.r M /trunk/VPRMpreproc.r M /trunk/config.r M /trunk/process_loess.r -added various config files to repository -in hdfread: h5r instead of hdf5 library for R (hdf5 not available for new R version) -in getModis: ftp modis discontinued as usgs, now http; adapted -updated project.nice to use proj4 instead of Rmap ------------------------------------------------------------------------ r69 | cgerbig | 2013-09-03 10:35:12 +0200 (Tue, 03 Sep 2013) | 1 line Changed paths: M /trunk/config.r A /trunk/config_EU2_2006.r A /trunk/config_EU2_2007.r A /trunk/config_EU2_2008.r A /trunk/config_EU2_2009.r A /trunk/config_EU2_2011.r A /trunk/config_EU2_2012.r A /trunk/config_OXK_2006.r A /trunk/config_OXK_2007.r A /trunk/config_OXK_2008.r A /trunk/config_SA2001.r A /trunk/config_SA2001_add.r A /trunk/config_SA2004_add.r A /trunk/config_SA2005_add.r M /trunk/submit_loess.sh now submit_loess.sh is executable; also added all config files ------------------------------------------------------------------------ r66 | cgerbig | 2013-05-29 12:49:13 +0200 (Wed, 29 May 2013) | 1 line Changed paths: M /trunk/manual.odt M /trunk/manual.pdf added section in Downloading MODIS Reflectance Data ------------------------------------------------------------------------ r65 | cgerbig | 2013-05-29 11:42:01 +0200 (Wed, 29 May 2013) | 2 lines Changed paths: M /trunk/RSources/getModis.r M /trunk/RSources/readIndicesIntoR.r Now automated download works Also deals with missing tiles in high northern latitudes during winter ------------------------------------------------------------------------ r64 | cgerbig | 2013-05-29 11:37:43 +0200 (Wed, 29 May 2013) | 2 lines Changed paths: M /trunk/RSources/extractAndReduce.r Deals with error in the bit values of the QA Bitmap Index within the Surface Reflectance 500 m Quality Control (QC) Flags in the MOD09A1 for years 2000-2002 Together with addition of EVI2000.sh and LSWI2000.sh ------------------------------------------------------------------------ r63 | cgerbig | 2013-05-29 11:35:51 +0200 (Wed, 29 May 2013) | 2 lines Changed paths: A /trunk/EVI2000.sh A /trunk/LSWI2000.sh Deals with error in the bit values of the QA Bitmap Index within the Surface Reflectance 500 m Quality Control (QC) Flags in the MOD09A1 for years 2000-2002 Together with modifications in RSources/extractAndReduce.r ------------------------------------------------------------------------ r62 | cgerbig | 2012-11-14 10:19:51 +0100 (Wed, 14 Nov 2012) | 2 lines Changed paths: M /trunk/RSources/loess.r M /trunk/VPRMpreproc.r M /trunk/manual.odt M /trunk/manual.pdf M /trunk/process_loess.r Deal with MODIS data gap in June 2001 Update manual (chapter MODIS data download) ------------------------------------------------------------------------ r61 | rkretsch | 2011-09-15 13:36:34 +0200 (Thu, 15 Sep 2011) | 6 lines Changed paths: M /trunk/RSources/getModis.r M /trunk/config.r - fixed bug: last revision included accidently getModis.r from the WRF branch M RSources/getModis.r ------------------------------------------------------------------------ r60 | rkretsch | 2011-03-21 10:15:06 +0100 (Mon, 21 Mar 2011) | 11 lines Changed paths: M /trunk/RSources/getModis.r M /trunk/RSources/loess.r M /trunk/RSources/readIndicesIntoR.r - added bugfix flag to loess.r and HDF read routines - updated list of available tiles in getModis.r M RSources/loess.r M RSources/readIndicesIntoR.r M RSources/getModis.r ------------------------------------------------------------------------ r58 | rkretsch | 2011-03-09 10:50:26 +0100 (Wed, 09 Mar 2011) | 4 lines Changed paths: M /trunk/EVI.sh M /trunk/RSources/doResampling.r M /trunk/RSources/project.nice.r * fixed bug that caused the resample program to use the default Earth radius 6371007.181000 m for projection and not the desired 6370000 m that WRF uses. According to MRT manual for the GEO projection only the default can be selected. ------------------------------------------------------------------------ r53 | tkoch | 2010-07-06 16:06:47 +0200 (Tue, 06 Jul 2010) | 1 line Changed paths: M /trunk/RSources/getminmax.r M /trunk/RSources/hdfread.r M /trunk/RSources/writeOutput.r M /trunk/VPRMpreproc.r M /trunk/process_loess.r M /trunk/submit_loess.sh replace values outside range and some other changes ------------------------------------------------------------------------ r50 | rkretsch | 2010-05-10 12:04:50 +0200 (Mon, 10 May 2010) | 10 lines Changed paths: M /trunk/RSources/hdfread.r * bug that caused large areas of NAs for South America domains fixed by C.Gerbig: "I found the bug in hdfread.r, where I originally excluded all values for EVI and LSWI outside of the window [0,3] by setting them to NA. The attached function now only marks those as NA that have the value -28672, the missing value indicator used by the shell scripts. " M RSources/hdfread.r ------------------------------------------------------------------------ r49 | rkretsch | 2010-04-22 20:12:31 +0200 (Thu, 22 Apr 2010) | 16 lines Changed paths: M /trunk/RSources/combineTiles.r M /trunk/RSources/getModis.r M /trunk/RSources/loess.r M /trunk/VPRMpreproc.r M /trunk/config.r M /trunk/submit_loess.sh M /trunk/submit_preproc.sh * minor bug fixes not affecting the output * changes to scripts for LSF submissions (parallel execution) * corrected table with ocean tiles which cannot to be used with the script (getModis.r) * some comments for bugfixing added in combineTiles.r M VPRMpreproc.r M submit_loess.sh M config.r M RSources/loess.r M RSources/getModis.r M RSources/combineTiles.r M submit_preproc.sh ------------------------------------------------------------------------ r46 | rkretsch | 2009-10-30 16:05:39 +0100 (Fri, 30 Oct 2009) | 17 lines Changed paths: M /trunk/RSources/combineTiles.r M /trunk/RSources/cutToDomain.r M /trunk/RSources/doAggregation.r M /trunk/RSources/gridEurope.r M /trunk/RSources/loess.r M /trunk/RSources/parseNamelist.r M /trunk/VPRMpreproc.r M /trunk/config.r M /trunk/process_loess.r M /trunk/submit_loess.sh * fixed bug in the aggregation routine, which caused pixels to be counted twice in the mean of the coarse grid cell (pixel at the upper/right border). * fixed bug which sometimes caused wrong combining of MODIS tiles * some minor changes M VPRMpreproc.r M submit_loess.sh M process_loess.r M config.r M RSources/loess.r M RSources/cutToDomain.r M RSources/gridEurope.r M RSources/parseNamelist.r M RSources/doAggregation.r M RSources/combineTiles.r ------------------------------------------------------------------------ r44 | rkretsch | 2009-06-30 10:54:17 +0200 (Tue, 30 Jun 2009) | 7 lines Changed paths: M /trunk/manual.odt M /trunk/manual.pdf * updated manual M manual.pdf M manual.odt ------------------------------------------------------------------------ r43 | rkretsch | 2009-06-25 10:25:50 +0200 (Thu, 25 Jun 2009) | 26 lines Changed paths: M /trunk/RSources/combineTiles.r M /trunk/RSources/doResampling.r M /trunk/RSources/gridEurope.r M /trunk/RSources/loess.r M /trunk/VPRMpreproc.r M /trunk/clean.r M /trunk/config.r A /trunk/get_synmap.sh M /trunk/submit_loess.sh * preparing the synmap is now done automatically from the config.r * added bash script to start preparing the synmap * in doResampling.r was a the '=' symbol used instad '<-' for assignment, this caused problems for the TLUT entries in some cases * improved the testing in the main script wether certain parts have to be executed or were already executed before * there was a bug when running loess on LSF, causing the script not to wait until all tiles had been loess filtered * a bug in combinTiles.r caused wrong results for a domain centered over CA, USA, this is fixed now * this revision was tested successfuly using T4 domain M VPRMpreproc.r AM get_synmap.sh M submit_loess.sh M clean.r M config.r M RSources/doResampling.r M RSources/loess.r M RSources/gridEurope.r M RSources/combineTiles.r ------------------------------------------------------------------------ r39 | rkretsch | 2009-04-01 11:52:55 +0200 (Wed, 01 Apr 2009) | 8 lines Changed paths: M /trunk/RSources/combineTiles.r * fixed bug introduced in last revision in tile combining, bug lead to wrong combining of tiles for large domains > 30 tiles M RSources/combineTiles.r ------------------------------------------------------------------------ r36 | rkretsch | 2009-03-31 13:59:34 +0200 (Tue, 31 Mar 2009) | 42 lines Changed paths: M /trunk/RSources/combineTiles.r M /trunk/RSources/cutToDomain.r M /trunk/RSources/doAggregation.r M /trunk/RSources/doResampling.r M /trunk/RSources/extractAndReduce.r M /trunk/RSources/getModis.r M /trunk/RSources/getminmax.r M /trunk/RSources/loess.r M /trunk/RSources/writeOutput.r M /trunk/VPRMpreproc.r M /trunk/config.r M /trunk/manual.odt M /trunk/manual.pdf M /trunk/process_loess.r M /trunk/submit_loess.sh A /trunk/submit_preproc.sh * fixed bug in aggregation which in some cases to dim errors * fixed bug in combine tiles which in some cases caused calculation of wrong mean where tiles overlap * fixed bug in output writing routine, which caused errors when writing min/max values to netcdf * improved script for job submission for parallel loess filtering to cluster * there is no separation between nests anymore (no dom variables) * added script to check VPRM preproc output * changed the code slightly in several places to allow for single tile domains * changed config.r to be able to choose which MODIS version to use and which indices to process (EVI, LSWI or both) * fixed bug in getminmax which in some cases lead to EVI values > 1 in output * changed location of results from loess filtering, netcdf files now always in mpath * added simple check in test script to test for SYNMAP/index georeferencing errors * increased threshold value in test script for comparison of MODIS/index values * added script to submit preprocessor to cluster * updated manual * this version completed the test successfuly for TESTBENCH_T4 domain (see config.r), T4 stands for 4 MODIS tiles used M VPRMpreproc.r M submit_loess.sh M process_loess.r M manual.pdf M manual.odt M config.r M RSources/doResampling.r M RSources/loess.r M RSources/extractAndReduce.r M RSources/cutToDomain.r M RSources/getminmax.r M RSources/doAggregation.r M RSources/getModis.r M RSources/writeOutput.r M RSources/combineTiles.r AM submit_preproc.sh ------------------------------------------------------------------------ r31 | rkretsch | 2009-03-10 14:48:41 +0100 (Tue, 10 Mar 2009) | 16 lines Changed paths: M /trunk/RSources/getminmax.r M /trunk/VPRMpreproc.r M /trunk/process_loess.r M /trunk/submit_loess.sh * added skip check, so MODIS initialization and loess only processed once * stderror is now also stored in logfiles when preprocessor/loess is submitted to cluster * added skip check, so MIN/MAX claculation only once * fixed typo bug in process_loess.r M VPRMpreproc.r M submit_loess.sh M process_loess.r M RSources/getminmax.r ------------------------------------------------------------------------ r26 | rkretsch | 2009-02-23 15:43:56 +0100 (Mon, 23 Feb 2009) | 32 lines Changed paths: D /trunk/README M /trunk/RSources/combineTiles.r M /trunk/RSources/cutToDomain.r M /trunk/RSources/doAggregation.r M /trunk/RSources/doResampling.r D /trunk/RSources/extractfrom.r M /trunk/RSources/getModis.r M /trunk/RSources/loess.r M /trunk/RSources/parseNamelist.r M /trunk/RSources/writeOutput.r M /trunk/VPRMpreproc.r M /trunk/clean.r M /trunk/clean_all.r A /trunk/config.r D /trunk/init_bugfix.r A /trunk/manual.odt A /trunk/manual.pdf D /trunk/namelist D /trunk/namelist.GEO D /trunk/namelist.LCC A /trunk/process_loess.r A /trunk/submit_loess.sh * changed output format to meet CF standard * general code cleanup * added manual (PDF, OpenOffice odt) * configuration is now done via config.r script * no namelists anymore M VPRMpreproc.r A submit_loess.sh M clean.r A process_loess.r AM manual.pdf D namelist.GEO D README AM manual.odt M RSources/doResampling.r M RSources/loess.r M RSources/cutToDomain.r D RSources/extractfrom.r M RSources/parseNamelist.r M RSources/doAggregation.r M RSources/getModis.r M RSources/writeOutput.r M RSources/combineTiles.r A config.r D init_bugfix.r M clean_all.r D namelist.LCC D namelist ------------------------------------------------------------------------ r23 | rkretsch | 2009-01-12 12:09:33 +0100 (Mon, 12 Jan 2009) | 20 lines Changed paths: M /trunk/RSources/combineTiles.r M /trunk/RSources/cutToDomain.r M /trunk/RSources/writeOutput.r M /trunk/VPRMpreproc.r M /trunk/namelist * new algorithm for combining tiles * works for large domains (>20 tiles) * no shift of indices necessary any more * changed ouput writing routine accordingly * changed cutting of map and indices * now same selecion of indices for map and indices * results in perfect match of mapping and indices M VPRMpreproc.r M RSources/cutToDomain.r M RSources/writeOutput.r M RSources/combineTiles.r M namelist ------------------------------------------------------------------------ r16 | rkretsch | 2008-10-14 13:53:21 +0200 (Tue, 14 Oct 2008) | 1 line Changed paths: M /trunk/RSources/loess.r M /trunk/RSources/writeOutput.r M /trunk/namelist ------------------------------------------------------------------------ r15 | rkretsch | 2008-01-08 13:46:05 +0100 (Tue, 08 Jan 2008) | 11 lines Changed paths: M /trunk/RSources/combineTiles.r M /trunk/RSources/cutToDomain.r M /trunk/RSources/getModis.r - changed handling of MODIS tiles: now only realy needed tiles are processed this is useful for large domains, tested with ZOTTO domain M RSources/cutToDomain.r M RSources/getModis.r M RSources/combineTiles. ------------------------------------------------------------------------ r14 | rkretsch | 2008-01-08 13:37:33 +0100 (Tue, 08 Jan 2008) | 4 lines Changed paths: D /trunc A /trunk (from /trunc:13) - correction of typo ------------------------------------------------------------------------ r13 | rkretsch | 2007-12-19 18:26:06 +0100 (Wed, 19 Dec 2007) | 4 lines Changed paths: M /trunc/VPRMpreproc.r - loess for lswi was commented out; fixed ------------------------------------------------------------------------ r12 | rkretsch | 2007-12-19 18:05:46 +0100 (Wed, 19 Dec 2007) | 18 lines Changed paths: M /trunc/RSources/cutToDomain.r M /trunc/RSources/doAggregation.r M /trunc/RSources/extractAndReduce.r M /trunc/RSources/getModis.r M /trunc/RSources/gridEurope.r M /trunc/RSources/loess.r M /trunc/RSources/readIndicesIntoR.r M /trunc/VPRMpreproc.r M /trunc/namelist - only tiles which are really needed are processed (doesn't work with combine tiles yet) - doyuse is now defined in one place and used everywhere, -> only needed days are processed M trunc/VPRMpreproc.r M trunc/RSources/loess.r M trunc/RSources/extractAndReduce.r M trunc/RSources/readIndicesIntoR.r M trunc/RSources/cutToDomain.r M trunc/RSources/gridEurope.r M trunc/RSources/doAggregation.r M trunc/RSources/getModis.r M trunc/namelist ------------------------------------------------------------------------ r11 | rkretsch | 2007-12-19 14:35:22 +0100 (Wed, 19 Dec 2007) | 8 lines Changed paths: M /trunc/RSources/getModis.r M /trunc/RSources/writeOutput.r M /trunc/namelist M /trunc/namelist.GEO - fixed sysntax error which caused wrong output (used wrong operator || instead of |) M RSources/writeOutput.r ------------------------------------------------------------------------ r10 | rkretsch | 2007-12-05 10:24:16 +0100 (Wed, 05 Dec 2007) | 7 lines Changed paths: M /trunc/RSources/doAggregation.r M /trunc/RSources/writeOutput.r M /trunc/namelist - fixed min/max issue also for LCC M RSources/doAggregation.r M RSources/writeOutput.r M namelist ------------------------------------------------------------------------ r9 | rkretsch | 2007-12-04 10:49:28 +0100 (Tue, 04 Dec 2007) | 10 lines Changed paths: M /trunc/RSources/doAggregation.r M /trunc/init_bugfix.r - corrected error due to change in min/max calculation vegmap was not claculated, because commented out M trunc/RSources/doAggregation.r M trunc/init_bugfix.r ------------------------------------------------------------------------ r8 | rkretsch | 2007-11-28 16:48:34 +0100 (Wed, 28 Nov 2007) | 15 lines Changed paths: M /trunc/RSources/cutToDomain.r M /trunc/RSources/doAggregation.r M /trunc/RSources/getminmax.r M /trunc/RSources/writeOutput.r M /trunc/VPRMpreproc.r M /trunc/clean.r M /trunc/namelist - fixed bug in min/max calculation - now done after aggregation M trunc/VPRMpreproc.r M trunc/clean.r M trunc/RSources/cutToDomain.r M trunc/RSources/getminmax.r M trunc/RSources/doAggregation.r M trunc/RSources/writeOutput.r M trunc/namelist ------------------------------------------------------------------------ r7 | rkretsch | 2007-11-19 16:28:29 +0100 (Mon, 19 Nov 2007) | 17 lines Changed paths: M /trunc/RSources/ReadSynmapDMM.r M /trunc/RSources/cutToDomain.r M /trunc/RSources/doAggregation.r M /trunc/RSources/doResampling.r M /trunc/RSources/getminmax.r M /trunc/RSources/writeOutput.r M /trunc/VPRMpreproc.r - changed: min/max are now also separated for each veg. class - changed: order of dimensions in netcdf output was changed - changed: RDATAin directory has to be set in namelist - changed: two algorithms for map aggregation, one is commented out - fixed bug: indices min/max were saved wrong (min/max identical) - fixed bug: reduction was only done for first 8 day interval M trunc/VPRMpreproc.r M trunc/RSources/doResampling.r M trunc/RSources/cutToDomain.r M trunc/RSources/getminmax.r M trunc/RSources/ReadSynmapDMM.r M trunc/RSources/doAggregation.r M trunc/RSources/writeOutput.r ------------------------------------------------------------------------ r6 | rkretsch | 2007-11-09 14:20:29 +0100 (Fri, 09 Nov 2007) | 6 lines Changed paths: M /trunc/RSources/writeOutput.r - corrected vegfra output, it was wrong order of dimensions and double instead of single precision M trunc/RSources/writeOutput.r ------------------------------------------------------------------------ r5 | rkretsch | 2007-11-08 12:15:30 +0100 (Thu, 08 Nov 2007) | 23 lines Changed paths: M /trunc/RSources/cutToDomain.r M /trunc/RSources/doAggregation.r M /trunc/RSources/writeOutput.r M /trunc/VPRMpreproc.r A /trunc/clean.r A /trunc/clean.sh A /trunc/clean_all.r A /trunc/clean_all.sh A /trunc/cp_proj_param.patch A /trunc/init_bugfix.r A /trunc/math_sds.patch M /trunc/namelist - min/max indices are now also saved as 3d fields, third dim is vegetation classes - changed order of dimensions in netcdf output (time, south-north, west-east, veg. classes) - values are now saved as single instead of double M trunc/VPRMpreproc.r A trunc/clean.r AM trunc/clean_all.sh AM trunc/clean.sh A trunc/math_sds.patch M trunc/RSources/cutToDomain.r M trunc/RSources/doAggregation.r M trunc/RSources/writeOutput.r A trunc/init_bugfix.r A trunc/clean_all.r A trunc/cp_proj_param.patch M trunc/namelist ------------------------------------------------------------------------ r4 | rkretsch | 2007-11-07 11:39:28 +0100 (Wed, 07 Nov 2007) | 5 lines Changed paths: D /trunc/RSources/initialize.R D trunc/RSources/initialize.R ------------------------------------------------------------------------ r3 | rkretsch | 2007-11-07 11:36:07 +0100 (Wed, 07 Nov 2007) | 4 lines Changed paths: A /trunc/namelist.GEO A /trunc/namelist.LCC A trunc/namelist.GEO A trunc/namelist.LCC ------------------------------------------------------------------------ r2 | rkretsch | 2007-11-07 11:32:01 +0100 (Wed, 07 Nov 2007) | 21 lines Changed paths: D /trunc/RDATAout M /trunc/README M /trunc/RSources/combineTiles.r M /trunc/RSources/cutToDomain.r M /trunc/RSources/doAggregation.r M /trunc/RSources/doResampling.r M /trunc/RSources/extractAndReduce.r M /trunc/RSources/getModis.r M /trunc/RSources/getminmax.r M /trunc/RSources/gridEurope.r M /trunc/RSources/imagell.r M /trunc/RSources/parseNamelist.r M /trunc/RSources/readIndicesIntoR.r M /trunc/RSources/writeOutput.r M /trunc/VPRMpreproc.r M /trunc/namelist D /trunc/outputdata M trunc/D trunc/RDATAout M trunc/RSources/doResampling.r M trunc/RSources/extractAndReduce.r M trunc/RSources/cutToDomain.r M trunc/RSources/readIndicesIntoR.r M trunc/RSources/getminmax.r M trunc/RSources/gridEurope.r M trunc/RSources/parseNamelist.r M trunc/RSources/doAggregation.r M trunc/RSources/imagell.r M trunc/RSources/getModis.r M trunc/RSources/writeOutput.r M trunc/RSources/combineTiles.r D trunc/outputdata M trunc/namelist M trunc/README ------------------------------------------------------------------------ r1 | rkretsch | 2007-07-09 14:18:58 +0200 (Mon, 09 Jul 2007) | 1 line Changed paths: A /trunc A /trunc/EVI.sh A /trunc/LSWI.sh A /trunc/RDATAout A /trunc/README A /trunc/RSources A /trunc/RSources/ReadSynmapDMM.r A /trunc/RSources/ReadSynmapDMM_orig.r A /trunc/RSources/assignr.r A /trunc/RSources/combineTiles.r A /trunc/RSources/cutToDomain.r A /trunc/RSources/distance.r A /trunc/RSources/doAggregation.r A /trunc/RSources/doResampling.r A /trunc/RSources/extractAndReduce.r A /trunc/RSources/extractfrom.r A /trunc/RSources/getModis.r A /trunc/RSources/getminmax.r A /trunc/RSources/getr.r A /trunc/RSources/gridEurope.r A /trunc/RSources/gridEurope.r.BAK A /trunc/RSources/gridEurope.r.orig.r A /trunc/RSources/hdfread.r A /trunc/RSources/image.plot.fix.r A /trunc/RSources/image.plot.plt.fix.r A /trunc/RSources/imagell.r A /trunc/RSources/initialize.R A /trunc/RSources/is.inf.r A /trunc/RSources/loess.r A /trunc/RSources/monthdayyear.r A /trunc/RSources/na_replace.r A /trunc/RSources/parseNamelist.r A /trunc/RSources/project.nice.r A /trunc/RSources/readIndicesIntoR.r A /trunc/RSources/synmap2vprm.txt A /trunc/RSources/writeOutput.r A /trunc/VPRMpreproc.r A /trunc/namelist A /trunc/outputdata A /trunc/preprocess.sh Initial import. ------------------------------------------------------------------------