Publikationen

Katal, N.; Rzanny, M.; Mäder, P.; Boho, D.; Wittich, H. C.; Tautenhahn, S.; Bebber, A.; Wäldchen, J.: Expanding phenological insights: automated phenostage annotation with community science plant images. International Journal of Biometeorology 69, S. 2353 - 2367 (2025)

Milis, A.; Hofmann, M.; Mäder, P.; Wäldchen, J.; de Haan, M.; Ballings, P.; Van der Beeten, I.; Goffinet, B.; Vanderpoorten, A.: Towards the automatized identification of moss species from their spore morphology. Annals of Botany, mcaf215 (2025)

Karbstein, K.; Choudhary, N.; Xie, T.; Tomasello, S.; Wagner, N. D.; Barke, B. H.; Paetzold, C.; Bradican, J. P.; Michaela, P.; Himmelbach, A. et al.; Stein, N.; Papantonis, A.; Irisarri, I.; de Vries, J.; Pucker, B.; Hörandl, E.: Assembling genomes of non-model plants: A case study with evolutionary insights from Ranunculus (Ranunculaceae). The Plant Journal 123 (6), e70390 (2025)

Hodač, L.; Dunker, S.; Schmal, M.; Carreño, E.; Mäder, P.; Lorenz, M.; Jamroszczyk, M.; Šubrt, D.; Meier, S.; Dürselen, C.-D. et al.; Wäldchen, J.: Exploiting algal strains for robust cross-domain phytoplankton classification via deep learning. Limnology and Oceanography: Methods (2025)

Schulze, E. D.; Wäldchen, J.; Hüttig, L.; Fritzlar, D.; Wetzel, M.; Schulze, E. E.; Schweingruber, F. H.: Fachwerk als Spiegel historischer Waldnutzung. Naturwissenschaftliche Rundschau 78 (8), S. 418 - 426 (2025)

Karbstein, K.; Lemke, T.; Westhus, W.; Rzanny, M.; Hodač, L.; Bebber, A.; Fritz, A.; Wittich, H. C.; Boho, D.; Mäder, P. et al.; Wäldchen, J.: App-basierte Erfassung von FFH- und Rote-Liste-Pflanzenarten mittels Flora Incognita. Landschaftspflege und Naturschutz in Thüringen 61 (2), S. 51 - 58 (2025)

Kösters, L.; Karbstein, K.; Hofmann, M.; Hodac, L.; Mäder, P.; Wäldchen, J.: Data fusion for integrative species identification using deep learning. Systematic Biology (2025)

Rzanny, M.; Bebber, A.; Wittich, H. C.; Fritz, A.; Boho, D.; Mäder, P.; Wäldchen, J.: More than rapid identification—Free plant identification apps can also be highly accurate. People and Nature 6 (6), S. 2178 - 2181 (2024)

Schatke, M.; Ulber, L.; Musavi, T.; Wäldchen, J.; von Redwitz, C.: From unwanted to wanted: Blending functional weed traits into weed distribution maps. Weed Research 64 (6), S. 407 - 417 (2024)

Hodač, L.; Karbstein, K.; Kösters, L.; Rzanny, M.; Wittich, H. C.; Boho, D.; Šubrt, D.; Mäder, P.; Wäldchen, J.: Deep learning to capture leaf shape in plant images: Validation by geometric morphometricss. The Plant Journal 120 (4), S. 1343 - 1357 (2024)

Hofmann, M.; Kiel, S.; Kösters, L.; Wäldchen, J.; Mäder, P.: Inferring taxonomic affinities and genetic distances using morphological features extracted from specimen images: a case study with a bivalve data set. Systematic Biology 73 (6), S. 920 - 940 (2024)

Tomasello, S.; Manzo, E.; Karbstein, K.: Comparative plastome assembly of the yellow ironweed (Verbesina alternifolia) using Nanopore and Illumina reads. Frontiers in Plant Science 15, 1429494 (2024)

Karbstein, K.; Kösters, L.; Hodač, L.; Hofmann, M.; Hörandl, E.; Tomasello, S.; Wagner, N. D.; Emerson, B. C.; Albach, D. C.; Scheu, S. et al.; Bradler, S.; de Vries, J.; Irisarri, I.; Li, H.; Soltis, P.; Mäder, P.; Wäldchen, J.: Species delimitation 4.0: integrative taxonomy meets artificial intelligence. Trends in Ecology and Evolution 39 (8), S. 771 - 784 (2024)

Mora, K.; Rzanny, M.; Wäldchen, J.; Feilhauer, H.; Kattenborn, T.; Kraemer, G.; Mäder, P.; Svidzinska, D.; Wolf, S.; Mahecha, M. D.: Macrophenological dynamics from citizen science plant occurrence data. Methods in Ecology and Evolution 15 (8), S. 1422 - 1437 (2024)

Lehmanski, L. M. A.; Kösters, L.; Huang, J.; Göbel, M.; Gershenzon, J.; Hartmann, H.: Windthrow causes declines in carbohydrate and phenolic concentrations and increased monoterpene emission in Norway spruce. PLOS ONE 19 (5), e0302714 (2024)

Nauber, T.; Hodač, L.; Wäldchen, J.; Mäder, P.: Parametrization of biological assumptions to simulate growth of tree branching architectures. Tree Physiology 44 (5), tpae045 (2024)

Sheard, J. K.; Adriaens, T.; Bowler, D. E.; Büermann, A.; Callaghan, C. T.; Camprasse, E. C. M.; Chowdhury, S.; Engel, T.; Finch, E. A.; von Gönner, J. et al.; Hsing, P.-Y.; Mikula, P.; Oh, R. Y. R.; Peters, B.; Phartyal, S. S.; Pocock, M. J. O.; Wäldchen, J.; Bonn, A.: Emerging technologies in citizen science and potential for insect monitoring. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 379 (1904), 20230106 (2024)

Rzanny, M.; Mäder, P.; Wittich, H. C.; Boho, D.; Wäldchen, J.: Opportunistic plant observations reveal spatial and temporal gradients in phenology. npj Biodiversity 3, 5 (2024)

Bebber, A.; Wäldchen, J.: Flora Incognita – mehr als Pfanzenbestimmung. Biologie in unserer Zeit 54 (1), S. 29 - 31 (2024)

Bradican, J. P.; Tomasello, S.; Boscutti, F.; Karbstein, K.; Hörand, E.: Phylogenomics of southern european taxa in the Ranunculus auricomus species complex: The apple doesn’t fall far from the tree. Plants 12 (21), 3664 (2023)