Department Biogeochemical Processes
Prof. Trumbore
The Biogeochemical Processes Division studies key processes and organisms that regulate the exchange of energy, water, and chemical compounds between ecosystems and their environments, and how these processes are affected by changes in climate and land use.
Within this broad goal, the Department maintains a focus on processes that are critical to understanding feedbacks between the land carbon cycle and climate and where lack of fundamental understanding currently limits the ability to predict the role of land as a source or sink for carbon in the coming decades to centuries. Broadly, the research in the Department shares the common goal to investigate processes that control how long carbon resides in ecosystem compartments, at spatial scales that span organisms to landscapes. Because of the importance of carbon to living organisms in storing energy and building structures, these processes are also fundamental to the functioning of ecosystems and their response to change.
At the organism (microbe or plant) scale, we investigate how environmental controls such as drought or substrate availability influence resource allocation and activity in ways that can alter the timescales of carbon storage. At the ecosystem scale, we investigate how biotic (e.g. community diversity) and abiotic factors (mineralogy or climate) alter land-atmosphere exchange and the timescales for stabilization or destabilization of C in soils. At the landscape scale, we assess how disturbance processes such as fire, drought, windthrow and herbivory, can alter ecosystem carbon stocks and cycling.
Approaches and Tools
Quantifying responses and feedbacks in complex, coupled systems requires a range of tools and approaches. Laboratory experiments manipulate individual factors such as temperature, biodiversity or nutrient availability to document how different components of the ecosystem respond to changing environmental conditions. We participate in large field experiments that manipulate biodiversity (Jena experiment) and disturbances such as fire (Tanguro experiment). Field observations of gradients of biodiversity through land management (Biodiversity Exploratories), or windthrows (ATTO) provide long-term field ‘experiments’. Links to our own Theory group, as well as other modeling groups in the Institute allow us to use our results to test theories/models of ecosystem/organism function. We also actively develop new analytical tools that allow us to evaluate the importance of processes across a range of spatial and temporal scales.
Recent Publications
Emmert, L.; Trumbore, S. E.; dos Santos, J.; Simonetti, A.; Lima, A.; Higuchi, N.; Negrón-Juárez, R.; Dias-Júnior, C.; El-Madany, T. S.; Kolle, O. et al.; de Mello Ribeiro, G. H. P.; Marra, D. M.: Strong canopy wind gusts across a topographic gradient and associated rainfall conditions in a Central Amazon forest. Agricultural and Forest Meteorology
391, 111504 (2026)
San-Emeterio, L. M.; Sierra, C.; Spohn, M.: Long-term soil organic phosphorus dynamics: evidence from
14C time series. Soil Biology and Biochemistry
223, 110316 (2026)
Bruni, E.; Lehtonen, A.; Hashimoto, S.; Ťupek, B.; Bacha, N.; Bunker, D.; Brasselet-Darracq, I.; Fages-Gouyou, D.; Hemeray, Y.; Reyer, C. P.O. et al.; Sierra, C.; Guenet, B.: me4soc: a multi-model ensemble interface for soil organic carbon predictions. Ecological Modelling
521, 111716 (2026)
Kepp, J.; Kiese, R.; Klaus, V. H.; Kleinebecker, T.; Pacay-Barrientos, N. L.; Schäufele, R.; Schloter, M.; Schöning, I.; Schrumpf, M.; Schulz, S. et al.; Schwärzler, T.; Schweizer, S. A.; Dannenmann, M.: Management rather than climate and biodiversity shapes long-term delta
15N dynamics in grassland soils. Agriculture, Ecosystems & Environment
411, 110651 (2026)
Huitema, A. C.; de Feiter, V. S.; González-Armas, R.; Hartogensis, O. K.; van Asperen, H.; Dias-Júnior, C. Q.; Vilà-Guerau de Arellano, J.: From prototypical regimes to observed complex dynamics and CO
2 transport in the Amazonian nocturnal boundary layer. Atmospheric Chemistry and Physics
26 (20), pp. 14725 - 14747 (2026)
Laliberté, E.; Caron-Guay, A.; Le Falher, V.; Tougas, G.; Muller-Landau, H. C.; Rivas-Torres, G.; Walla, T. R.; Baudchon, H.; Hernandez, M.; Buenaño, A. et al.; Weber, A.; Chambers, J. Q.; Inuma, J. C.; Araúz, F.; Valdes, J.; Hernández, A.; Brassfield, D.; Sérgio, P.; Vasquez, V.; Simonetti, A.; Marra, D. M.; Vasconcelos, C.; Vaca, J. F.; Rivadeneyra, G.; Illanes, J.; Salagaje-Muela, L. A.; Gualinga, J.: Seeing both the forest and the trees: An automated workflow for ultra-high-resolution drone imaging of tropical canopies. Methods in Ecology and Evolution (2026)
Torresani, M.; Montali, M.; Da Re, D.; Da Ros, L.; Hakkenberg, C. R.; Rocchini, D.; Mina, M.; Waegeman, W.; Foody, G.; Menaa, M. et al.; Wingler, A.; Fraisl, D.; Andreoli, A.; Goethals, P.; Pasolli, E.; Borruso, L.; Perrone, M.; Stock, M.; De Baets, B.; Brunori, G.; Stritih, A.; Bottero, A.; Cherubini, P.; Ghidini, C.; Orlandini, A.; Poccianti, P.; Rossi, C.; Cotrina-Sanchez, A.; Urquiza-Muñoz, J. D.; Veneros, J.; Rodel Vouffo Nguimdo, V.; Andreo, V.; Altintas, I.; Satta, G. G. A.; Pitscheider, F.; Rozzoni, A.; Koyanagi, K.; Sterenczak, K.; Tognetti, R.: Opening ecological data to reduce bias and strengthen AI in ecology. Bioscience, biag147 (2026)
Saiz, H.; Neuenkamp, L.; Penone, C.; Birkhofer, K.; Blüthgen, N.; Boch, S.; Bonkowski, M.; Buscot, F.; Felipe-Lucia, M.; Fiore-Donno, A.-M. et al.; Fischer, M.; Freitag, M.; Godoy, O.; Goldmann, K.; Gossner, M.; Hamer, U.; Hölzel, N.; Jung, K.; Kandeler, E.; Klaus, V.; Kleinebecker, T.; Leimer, S.; Marhan, S.; Oelmann, Y.; Overmann, J.; Prati, D.; Renner, S.; Rillig, M.; Seibold, S.; Schloter, M.; Schoening, I.; Sikorski, J.; Socher, S.; Solly, E.; Steffan-Dewenter, I.; Stempfhuber, B.; Westphal, C.; Wilcke, W.; Wubet, T.; Wurst, S.; Allan, E.: Land use intensification results in abrupt transitions between extensively and intensively managed grasslands. Functional Ecology (2026)
Brashear, C. A.; van Herpen, M. M. J. W.; Gromov, S.; van de Kraats, B.; van der Veen, C.; Yu, X.; Johnson, M. S.; Timas, H.; Zaehle, S.; Jordan, A. et al.; Moossen, H.; Barreto, A.; Pratts, N.; Baños, I.; Arrieta, J.; Young, D.; Sealy, P.; van Asperen, H.; Montaguti, S.; Sperlich, P.; Moss, R.; Nichol, S.; Platt, S. M.; Hermansen, O.; Myhre, C. L.; Petron, G.; Crotwell, A.; Vimont, I.; Röckmann, T.: Isotope-informed analysis of changes in the global CO budget over the past 30 years. EGUsphere (2026)
Vardag, S. N.; Ticks, K.; Botiá, S.; Eisele, G.; Papastefanou, P.; Quaresma, C.; van Asperen, H.; Alves de Souza, C.; D'Oliveira, F. A. F.; Trumbore, S. E. et al.; Zaehle, S.; Jones, S. P.: Drivers of multi-year delta
13C-CO
2 source signature variability in the Amazon rainforest. EGUsphere (2026)