Department Biogeochemical Processes
Prof. Trumbore
The Biogeochemical Processes Division studies key processes and organisms that regulate the exchange of energy, water, and chemical compounds between ecosystems and their environments, and how these processes are affected by changes in climate and land use.
Within this broad goal, the Department maintains a focus on processes that are critical to understanding feedbacks between the land carbon cycle and climate and where lack of fundamental understanding currently limits the ability to predict the role of land as a source or sink for carbon in the coming decades to centuries. Broadly, the research in the Department shares the common goal to investigate processes that control how long carbon resides in ecosystem compartments, at spatial scales that span organisms to landscapes. Because of the importance of carbon to living organisms in storing energy and building structures, these processes are also fundamental to the functioning of ecosystems and their response to change.
At the organism (microbe or plant) scale, we investigate how environmental controls such as drought or substrate availability influence resource allocation and activity in ways that can alter the timescales of carbon storage. At the ecosystem scale, we investigate how biotic (e.g. community diversity) and abiotic factors (mineralogy or climate) alter land-atmosphere exchange and the timescales for stabilization or destabilization of C in soils. At the landscape scale, we assess how disturbance processes such as fire, drought, windthrow and herbivory, can alter ecosystem carbon stocks and cycling.
Approaches and Tools
Quantifying responses and feedbacks in complex, coupled systems requires a range of tools and approaches. Laboratory experiments manipulate individual factors such as temperature, biodiversity or nutrient availability to document how different components of the ecosystem respond to changing environmental conditions. We participate in large field experiments that manipulate biodiversity (Jena experiment) and disturbances such as fire (Tanguro experiment). Field observations of gradients of biodiversity through land management (Biodiversity Exploratories), or windthrows (ATTO) provide long-term field ‘experiments’. Links to our own Theory group, as well as other modeling groups in the Institute allow us to use our results to test theories/models of ecosystem/organism function. We also actively develop new analytical tools that allow us to evaluate the importance of processes across a range of spatial and temporal scales.
Recent Publications
Ivanova, A.; Tang, W.; Simon, C.; Dührkop, K.; Böcker, S.; Gleixner, G.: Enhancing chimeric fragmentation spectra deconvolution using direct infusion–tandem mass spectrometry across high-resolution mass spectrometric platforms. Rapid Communications in Mass Spectrometry
40 (3), e10170 (2026)
Kalinski, J.-C.; Brandã o da Costa, B. R.; Schramm, T.; Buckett, L. R.; Carlson, L. T.; Coffey, N. R.; Damiani, T.; Dechent, E.; El Abiead, Y.; Heuckeroth, S. et al.; Jennings, E. K.; Kaesler, J.; Stock, N. L.; Orme, A. M.; Torres, R. R.; Trojahn, S.; Whelton, H. L.; Yan, Y.; Aron, A. T.; Boiteau, R. M.; Bull, I. D.; Dorrestein, P. C.; Dang, D. H.; Evershed, R. P.; Gledhill, M.; Gleixner, G.; Haas, A. F.; Hansen, M.; Harder, T.; Hopmans, E. C.; Ingalls, A. E.; Karst, U.; Kew, W.; Soule, M. K.; Koch, B. P.; Kujawinski, E. B.; Lechtenfeld, O. J.; Longnecker, K.; Pluskal, T.; Pohnert, G.; Redman, Z. C.; Rivas-Ubach, A.; Schmitt-Kopplin, P.; Singer, G.; Tebben, J.; Tomco, P. L.; Ward, N. D.; Aluwihare, L. I.; Simon, C.; Hawkes, J.; Petras, D.: Comparability of liquid chromatography tandem mass spectrometry analysis of dissolved organic matter across laboratories. Environmental Science & Technology (2026)
Negron-Juarez, R.; Feng, Y.; Sheil, D.; Keller, M.; Ordway, E. M.; Marra, D. M.; Urquiza-Muñoz, J. D.: Widespread forest disturbance from windthrow in central African rainforests. npj Natural Hazards
3, 9 (2026)
Maia-Braga, P. L.; Bueno, A. S.; Maximiano, M. F. A.; Haugaasen, T.; Anciães, M.; Blake, J. G.; Loiselle, B. A.; Borges, S. H.; Menger, J.; Dantas, S. et al.; Melinski, R. D.; Souza, A. H. N.; de Abreu, F. H. T.; Boss, R. L.; Peres, C. A.: Patterns of understorey bird diversity across Amazonian forests: survey effort and range maps predict local species richness. Ecography, e07625 (2026)
Sierra, C.; Trumbore, S. E.: Radiocarbon and the transit time of carbon in terrestrial ecosystems. Current Climate Change Reports
12 (1) (2026)
Hild, K.; Kwarkye, N.; Huang, C.; Harms, H.; Chatzinotas, A.; Ritschel, T.; Totsche, K. U.; Wick, L. Y.: Transport and survival of marine tracer phages in topsoil at field conditions. Environmental Science & Technology
60 (1), pp. 677 - 687 (2026)
Chambers, J. Q.; Lima, A. J. N.; Pastorello, G.; Gimenez, B. O.; Meng, L.; Dyer, L. A.; Feng, Y.; da Silva, C. S.; de Oliveira, R. C.; Weber, A. et al.; Koven, C.; Negrón-Juárez, R.; Spanner, G. C.; Gaui, T. D.; Fontes, C. G.; de Araújo, A. C.; McDowell, N.; Leung, R.; Marra, D. M.; Warren, J.; Souza, D. C.; Wright, C.; Jardine, K.; Longo, M.; Xu, C.; Fine, P. V. A.; Fisher, R. A.; Tomasella, J.; Santos, J. d.; Higuchi, N.: Hot droughts in the Amazon provide a window to a future hypertropical climate. Nature (2025)
Moossen, H.; Steur, P. M.; Camin, F.; Krajnc, B.; Enke, A.; Geilmann, H.; Paul, D.; Lange, M.; von Rein, I.; Meijer, H. A. J.: How well do we know VPDB—Part 2: Interlaboratory assessment of existing delta
13C VPDB reference Materials. Rapid Communications in Mass Spectrometry
40 (4), e10171 (2025)
Kim, S.; Huh, W.; Jeon, J.; Park, C.; Park, S.; Wookyung, S.; Park, Y.; Baek, J.; Lee, M.; Lee, H. et al.; Hong, J.; Kim, S.; Kim, K.; Oh, N.-H.; Chung, H.; Choe, H.; Kim, H. S.: Linking water and carbon use traits to drought and warming response strategies in three high-elevation species. Tree Physiology (accepted)
Braga, P.; Bueno, A.; Davies, R.; Maximiano, M.; Haugaasen, T.; Anciães, M.; Blake, J.; Loiselle, B.; Borges, S.; Menger, J. et al.; Dantas, S.; Melinski, R. D.; Teófilo de Abreu, F.; Boss, R.; Peres, C.: How much sampling is enough? Four decades of understorey bird mist-netting across Amazonia define the minimum effort to uncover species assemblage structure. Ibis (2025)