Data and Software
Data products, online services and open software
Below, find a couple of published and unpublished tools, services and data products from the Department of Biogeochemical Integration. These tools are available online or upon request from the respective contact person. These products are free for non-commercial use if not mentioned otherwise. For data products we only ask for personal contact (an automatic registration is on the way) to be able to track use of the data, and provide updates and further information via a e-mail to users.
Data sets
Data set |
Information |
Contact |
| In general, BGI data products are available from our data portal | http://www.bgc-jena.mpg.de/geodb/BGI/Home In case of problems please contact: | Gerhard Boenisch, Fabian Gans, Miguel Mahecha |
| Site level estimates of GPP and TER from FLUXNET eddy covariance stations | This data set is derived from the LaThuile-2007-FLUXNET data set as documented at according to the new algorithm by Lasslop et al. (2010). Site data is freely available after authorization by the respective site PI. | Gitta Lasslop, Markus Reichstein |
| Average annual global GPP | This is a data set of global annual GPP at 0.5° lat/lon resolution as published in Beer et al. (2010). It is based on empirical up-scaling of FLUXNET data from the La-Thuile-2007 synthesis effort (www.fluxdata.org), and the median of several scaling approaches. | Christian Beer, Markus Reichstein |
Monthly estimates of global evapotranspiration | This is a data set of up-scaled monthly global Evapotranspiration at 0.5° lat/lon resolution from 1982 to 2008 as published in Jung et al. (2010). It is based on empirical up-scaling of FLUXNET data from the La-Thuile-2007 synthesis effort (www.fluxdata.org). | Martin Jung, Markus Reichstein |
| Monthly estimates of other global biosphere-atmosphere fluxes | These are data sets of up-scaled monthly global carbon, energy and water fluxes at 0.5° lat/lon resolution from 1982 to 2008, currently unpublished. It is based on empirical up-scaling of FLUXNET data from the La-Thuile-2007 synthesis effort (www.fluxdata.org).
| Martin Jung, Markus Reichstein |
Online processing tools
| Service | Information | Contact
|
| R based Online eddy covariance processing tool | (URL: Services/REddyProcWeb) see note below Comments: The new tool implements the same standardized methods of Reichstein et al. (2005) in R.
| Markus Reichstein, Thomas Wutzler, |
Openly available software
R packages
REddyProc: Eddy Covariance data processing
logitnorm: transforming bounded parameters to normal scale, for inverse modelling
twSnowfall: tracing errors on the cluster and load-balancing
- twNlme: standard errors for prediction of statistical models fitted with nlme and gnls
- jbtools: tools for spectral decomposition and gapfilling and for NetCDF file handling from J. Buttlar
- greenbrown: analysis of trends and trend changes in gridded time series like from satellite observations or climate model simulations
- bigleaf: calculation of physical and physiological ecosystem properties from eddy covariance data
Julia packages
- NetCDF.jl NetCDF interface for the Julia programming language
- Bigleaf.jl calculation of physical and physiological ecosystem properties from eddy covariance data